ScAdver: Adversarial Batch Correction for Single-Cell Data
Published:
Train once, project forever batch correction for single-cell RNA-seq with probe-gated adaptive query projection and robust domain adaptation.
Projects
A selection of research and engineering projects across AI, genomics, and drug discovery.
BulkRNA-Agent: AI-Powered Transcriptomics Analysis.
Published:
Open-source AI tool combining dual LLM architecture for intelligent bulk RNA-seq analysis with 100% local processing.
Pokemon Agent: AI-Powered Pokemon Battle Agent.
Published:
Building an AI-Powered Pokemon Battle Agent: When LLMs Meet Strategic Gaming 🎮⚡
OmicsFormer: Transforming Multi-Omics Data Integration with Deep Learning.
Published:
OmicsFormer is an open-source PyTorch framework that uses transformer architectures to integrate multi-omics data from multiple studies, handling missing modalities and batch effects. Validated on real-world SLE data achieving 91% accuracy across 8 independent studies.
OmicsNet: Integrating data from multiple omics modalities to build and analyze feature-level networks.
Published:
Introducing OmicsNet: Multi-Omics Integration Without Sample Overlap
AlphaGenome’s U-Net Architecture Implementation
Published:
Complete implementation of DeepMind’s 450M parameter model for genomic sequence analysis and multi-modal predictions.
MultiOmicsBind: Deep Learning framework for Multi-Omics Data Integration
Published:
Deep learning framework applying ImageBind’s binding modality concept to integrate genomics, transcriptomics, proteomics, and metabolomics data.
DeepSeek-V3 Model Architecture: Educational Deep Dive
Published:
DeepSeek-V3 Model Architecture: Educational Deep Dive
GPT-OSS Architecture: Implementation
Published:
GPT-OSS: Architecture Implementation
EVO2 DNA Foundational model Demo
Published:
🧬 EVO2 DNA FOUNDATIONAL MODEL Demo Summary 🚀
LLMs + Foundational models for Single Cell Analysis
Published:
🚀 We’re entering an exciting era where Biological Foundation Models are being integrated with Large Language Models (LLMs) — opening up powerful new ways to model cellular biology.
Reproducing GPT-2
Published:
🧠💬 ChatGPT has become an integral part of my daily life. I became increasingly intrigued to understand what was going on under the hood of the GPT model and spent my weekends 🛠️ building a GPT model — aiming to replicate OpenAI’s GPT-2 (124M) model.